dorsal/arxiv
View SchemaOn the effect of fluctuating recombination rates on the decorrelation of gene histories in the human genome
| Authors | A. Eriksson, B. Mehlig |
|---|---|
| Categories | |
| ArXiv ID | q-bio/0404020 |
| URL | https://arxiv.org/abs/q-bio/0404020 |
| DOI | 10.1534/genetics.103.018002 |
| Journal | Genetics 169, 1175-1178 (2005) |
Abstract
We show how to incorporate fluctuations of the recombination rate along the chromosome into standard gene-genealogical models for the decorrelation of gene histories. This enables us to determine how small-scale fluctuations (Poissonian hot-spot model) and large-scale variations [Kong et al. (2002)] of the recombination rate influence this decorrelation. We find that the empirically determined large-scale variations of the recombination rate give rise to a significantly slower decay of correlations compared to the standard, unstructured gene-genealogical model assuming constant recombination rate. A model with long-range recombination-rate variations and with demographic structure (divergent population) is found to be consistent with the empirically observed slow decorrelation of gene histories. Conversely, we show that small-scale recombination-rate fluctuations do not alter the large-scale decorrelation of gene histories.
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"abstract": "We show how to incorporate fluctuations of the recombination rate along the chromosome into standard gene-genealogical models for the decorrelation of gene histories. This enables us to determine how small-scale fluctuations (Poissonian hot-spot model) and large-scale variations [Kong et al. (2002)] of the recombination rate influence this decorrelation. We find that the empirically determined large-scale variations of the recombination rate give rise to a significantly slower decay of correlations compared to the standard, unstructured gene-genealogical model assuming constant recombination rate. A model with long-range recombination-rate variations and with demographic structure (divergent population) is found to be consistent with the empirically observed slow decorrelation of gene histories. Conversely, we show that small-scale recombination-rate fluctuations do not alter the large-scale decorrelation of gene histories.",
"arxiv_id": "q-bio/0404020",
"authors": [
"A. Eriksson",
"B. Mehlig"
],
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"doi": "10.1534/genetics.103.018002",
"journal_ref": "Genetics 169, 1175-1178 (2005)",
"title": "On the effect of fluctuating recombination rates on the decorrelation of gene histories in the human genome",
"url": "https://arxiv.org/abs/q-bio/0404020"
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