{
  "annotation_id": "b97009be-8a9f-4355-903d-29b0a0c11f1e",
  "date_created": "2026-03-02T18:00:59.870000Z",
  "date_modified": "2026-03-02T18:00:59.870000Z",
  "file_hash": "a5841f0acb08e79e61961d0a9b73e1be301eca762fd4325a49222fc30113c914",
  "private": false,
  "record": {
    "abstract": "We present a nonlinear dynamical model for DNA thermal denaturation, which is\nbased on the finite stacking enthalpies used in thermodynamical\nnearest-neighbour calculations. Within this model, the finiteness of stacking\nenthalpies is shown to be responsible for the sharpness of calculated melting\ncurves. Transfer-integral and molecular dynamics calculations are performed to\ndemonstrate that the proposed model leads to good agreement with known\nexperimental results for both homogeneous and inhomogeneous DNA.",
    "arxiv_id": "physics/0508189",
    "authors": [
      "Marc Joyeux",
      "Sahin Buyukdagli"
    ],
    "categories": [
      "physics.bio-ph"
    ],
    "doi": "10.1103/PhysRevE.72.051902",
    "journal_ref": "Physical Review E 72 (2005) 051902",
    "title": "Dynamical model based on finite stacking enthalpies for homogeneous and   inhomogeneous DNA thermal denaturation",
    "url": "https://arxiv.org/abs/physics/0508189"
  },
  "schema_id": "dorsal/arxiv",
  "source": {
    "execution_id": "cbd20cd7-48ee-4739-8225-59949088086e",
    "id": "arXiv Dataset IDs",
    "type": "Model",
    "variant": "snapshot-2026-03-01",
    "version": "0.1.0"
  },
  "user_id": 1000002
}