dorsal/arxiv
View SchemaNonlinear Finite Element Analysis of Nanoindentation of Viral Capsids
| Authors | Melissa M. Gibbons, William S. Klug |
|---|---|
| Categories | |
| ArXiv ID | physics/0608171 |
| URL | https://arxiv.org/abs/physics/0608171 |
| DOI | 10.1103/PhysRevE.75.031901 |
Abstract
Recent Atomic Force Microscope (AFM) nanoindentation experiments measuring mechanical response of the protein shells of viruses have provided a quantitative description of their strength and elasticity. To better understand and interpret these measurements, and to elucidate the underlying mechanisms, this paper adopts a course-grained modeling approach within the framework of three-dimensional nonlinear continuum elasticity. Homogeneous, isotropic, elastic, thick shell models are proposed for two capsids: the spherical Cowpea Chlorotic Mottle Virus (CCMV), and the ellipsocylindrical bacteriophage $\phi 29$. As analyzed by the finite element method, these models enable parametric characterization of the effects of AFM tip geometry, capsid dimensions, and capsid constitutive descriptions. The generally nonlinear force response of capsids to indentation is shown to be insensitive to constitutive details, and greatly influenced by geometry. Nonlinear stiffening and softening of the force response is dependent on the AFM tip dimensions and shell thickness. Fits of the models capture the roughly linear behavior observed in experimental measurements and result in estimates of Young's moduli of $\approx$280--360 MPa for CCMV and $\approx$4.5 GPa for $\phi 29$.
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"abstract": "Recent Atomic Force Microscope (AFM) nanoindentation experiments measuring\nmechanical response of the protein shells of viruses have provided a\nquantitative description of their strength and elasticity. To better understand\nand interpret these measurements, and to elucidate the underlying mechanisms,\nthis paper adopts a course-grained modeling approach within the framework of\nthree-dimensional nonlinear continuum elasticity. Homogeneous, isotropic,\nelastic, thick shell models are proposed for two capsids: the spherical Cowpea\nChlorotic Mottle Virus (CCMV), and the ellipsocylindrical bacteriophage $\\phi\n29$. As analyzed by the finite element method, these models enable parametric\ncharacterization of the effects of AFM tip geometry, capsid dimensions, and\ncapsid constitutive descriptions. The generally nonlinear force response of\ncapsids to indentation is shown to be insensitive to constitutive details, and\ngreatly influenced by geometry. Nonlinear stiffening and softening of the force\nresponse is dependent on the AFM tip dimensions and shell thickness. Fits of\nthe models capture the roughly linear behavior observed in experimental\nmeasurements and result in estimates of Young\u0027s moduli of $\\approx$280--360 MPa\nfor CCMV and $\\approx$4.5 GPa for $\\phi 29$.",
"arxiv_id": "physics/0608171",
"authors": [
"Melissa M. Gibbons",
"William S. Klug"
],
"categories": [
"physics.bio-ph",
"physics.comp-ph"
],
"doi": "10.1103/PhysRevE.75.031901",
"title": "Nonlinear Finite Element Analysis of Nanoindentation of Viral Capsids",
"url": "https://arxiv.org/abs/physics/0608171"
},
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