dorsal/arxiv
View SchemaNonlinear Dynamics in the Binary DNA/RNA Coding Problem
| Authors | M. Martinis |
|---|---|
| Categories | |
| ArXiv ID | physics/0101067 |
| URL | https://arxiv.org/abs/physics/0101067 |
Abstract
The presence of low dimensional chaos in the protein secondary structures, using the binary coded $\alpha$-helices and $\beta$-sheet motifs, has been investigated. In order to analyse symbolic DNA/RNA sequences the assignment, based on the purine/pyrimidine and strong/wea k H - bond classification sheme, of binary numbers to the nucleotides was made. We have found that this assignment leads to different averaged fractal dimensions for $\alpha$-helices and $\beta$-sheets. When embedded in the two dimensional phase space the binary string structures show the attractor type behavior which depends on the value of the time lag parameter.
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"abstract": "The presence of low dimensional chaos in the protein secondary structures,\nusing the binary coded $\\alpha$-helices and $\\beta$-sheet motifs, has been\ninvestigated. In order to analyse symbolic DNA/RNA sequences the assignment,\nbased on the purine/pyrimidine and strong/wea k H - bond classification sheme,\nof binary numbers to the nucleotides was made. We have found that this\nassignment leads to different averaged fractal dimensions for $\\alpha$-helices\nand $\\beta$-sheets. When embedded in the two dimensional phase space the binary\nstring structures show the attractor type behavior which depends on the value\nof the time lag parameter.",
"arxiv_id": "physics/0101067",
"authors": [
"M. Martinis"
],
"categories": [
"physics.bio-ph",
"q-bio"
],
"title": "Nonlinear Dynamics in the Binary DNA/RNA Coding Problem",
"url": "https://arxiv.org/abs/physics/0101067"
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