dorsal/arxiv
View SchemaConvergent dynamics in the protease enzymatic superfamily
| Authors | Vincenzo Carnevale, Simone Raugei, Cristian Micheletti, Paolo Carloni |
|---|---|
| Categories | |
| ArXiv ID | q-bio/0609025 |
| URL | https://arxiv.org/abs/q-bio/0609025 |
| DOI | 10.1021/ja060896t |
| Journal | J. Am. Chem. Soc. 128, 9766-9772 (2006) |
Abstract
Proteases regulate various aspects of the life cycle in all organisms by cleaving specific peptide bonds. Their action is so central for biochemical processes that at least 2% of any known genome encodes for proteolytic enzymes. Here we show that selected proteases pairs, despite differences in oligomeric state, catalytic residues and fold, share a common structural organization of functionally relevant regions which are further shown to undergo similar concerted movements. The structural and dynamical similarities found pervasively across evolutionarily distant clans point to common mechanisms for peptide hydrolysis.
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"abstract": "Proteases regulate various aspects of the life cycle in all organisms by\ncleaving specific peptide bonds. Their action is so central for biochemical\nprocesses that at least 2% of any known genome encodes for proteolytic enzymes.\nHere we show that selected proteases pairs, despite differences in oligomeric\nstate, catalytic residues and fold, share a common structural organization of\nfunctionally relevant regions which are further shown to undergo similar\nconcerted movements. The structural and dynamical similarities found\npervasively across evolutionarily distant clans point to common mechanisms for\npeptide hydrolysis.",
"arxiv_id": "q-bio/0609025",
"authors": [
"Vincenzo Carnevale",
"Simone Raugei",
"Cristian Micheletti",
"Paolo Carloni"
],
"categories": [
"q-bio.BM",
"cond-mat.soft",
"physics.bio-ph"
],
"doi": "10.1021/ja060896t",
"journal_ref": "J. Am. Chem. Soc. 128, 9766-9772 (2006)",
"title": "Convergent dynamics in the protease enzymatic superfamily",
"url": "https://arxiv.org/abs/q-bio/0609025"
},
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