{
  "annotation_id": "8135c5b7-9c2c-4ba1-993b-14236e4f6c86",
  "date_created": "2026-03-02T18:01:34.934000Z",
  "date_modified": "2026-03-02T18:01:34.934000Z",
  "file_hash": "f97931992805defc5a87f35b0537232cfaf8cf0fcd91dc9b63b91cc600cb2d69",
  "private": false,
  "record": {
    "abstract": "We formulate a simple solvation potential based on a coarsed-grain\nrepresentation of amino acids with two spheres modeling the $C_\\alpha$ atom and\nan effective side-chain centroid. The potential relies on a new method for\nestimating the buried area of residues, based on counting the effective number\nof burying neighbours in a suitable way. This latter quantity shows a good\ncorrelation with the buried area of residues computed from all atom\ncrystallographic structures. We check the discriminatory power of the solvation\npotential alone to identify the native fold of a protein from a set of decoys\nand show the potential to be considerably selective.",
    "arxiv_id": "q-bio/0606031",
    "authors": [
      "A. Bhattacharyay",
      "A. Trovato",
      "F. Seno"
    ],
    "categories": [
      "q-bio.BM"
    ],
    "title": "Simple solvation potential for coarse-grained models of proteins",
    "url": "https://arxiv.org/abs/q-bio/0606031"
  },
  "schema_id": "dorsal/arxiv",
  "source": {
    "execution_id": "1e893fd9-d628-4dcd-a342-41890d20f59a",
    "id": "arXiv Dataset IDs",
    "type": "Model",
    "variant": "snapshot-2026-03-01",
    "version": "0.1.0"
  },
  "user_id": 1000002
}