dorsal/arxiv
View SchemaExtrapolative Analysis of Fast-Switching Free Energy Estimates in a Molecular System
| Authors | Daniel M. Zuckerman, Thomas B. Woolf |
|---|---|
| Categories | |
| ArXiv ID | physics/0107066 |
| URL | https://arxiv.org/abs/physics/0107066 |
Abstract
We perform an extrapolative analysis of "fast-growth" free-energy-difference (DF) estimates of a computer-modeled, fully-solvated ethane<->methanol transformation. The results suggest that extrapolation can greatly reduce the systematic error in DF estimated from a small number of very fast switches. Our extrapolation procedure uses block-averages of finite-data estimates, and appears to be particularly useful for broad, non-Gaussian distributions of data which produce substantial systematic errors with insufficient data. In every tested case, the extrapolative results were better than direct estimates.
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"abstract": "We perform an extrapolative analysis of \"fast-growth\" free-energy-difference\n(DF) estimates of a computer-modeled, fully-solvated ethane\u003c-\u003emethanol\ntransformation. The results suggest that extrapolation can greatly reduce the\nsystematic error in DF estimated from a small number of very fast switches. Our\nextrapolation procedure uses block-averages of finite-data estimates, and\nappears to be particularly useful for broad, non-Gaussian distributions of data\nwhich produce substantial systematic errors with insufficient data. In every\ntested case, the extrapolative results were better than direct estimates.",
"arxiv_id": "physics/0107066",
"authors": [
"Daniel M. Zuckerman",
"Thomas B. Woolf"
],
"categories": [
"physics.chem-ph",
"physics.comp-ph",
"physics.data-an"
],
"title": "Extrapolative Analysis of Fast-Switching Free Energy Estimates in a Molecular System",
"url": "https://arxiv.org/abs/physics/0107066"
},
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