{
  "annotation_id": "5c8f4ee2-93f4-4c7d-a2ee-07237ba09620",
  "date_created": "2026-03-02T18:01:31.809000Z",
  "date_modified": "2026-03-02T18:01:31.809000Z",
  "file_hash": "b218cd11b0ac9159457bda18c7cb8f65c7707b050e275538244e33061e91e742",
  "private": false,
  "record": {
    "abstract": "By means of the nonlinear modeling technique (NM technique), we find the\nnonlinear deterministic structures in the promoter regions (PPRs) of DNA\nsequences, called deterministic valleys (DVs) in this paper. These DVs prefer\nto occur much more outside of a special region around TSS. The number,\npositions and shapes of the DVs are basically different for different PPRs.\nGenerally, these DVs do not occur in the CpG islands, which tells us that they\nshould be special structures with new biological functions rather than the CpG\nislands. PACS numbers: 87.14.Gg, 87.10.1e, 05.45.2a",
    "arxiv_id": "q-bio/0505015",
    "authors": [
      "Huijie Yang",
      "Fangcui Zhao",
      "Jianzhong Gu",
      "Binghong Wang"
    ],
    "categories": [
      "q-bio.GN",
      "cond-mat.stat-mech",
      "q-bio.BM"
    ],
    "journal_ref": "Journal of Theoretical Biology 241 (2006) 765?C773",
    "title": "Nonlinear Modeling Approach to Human Promoter Sequences",
    "url": "https://arxiv.org/abs/q-bio/0505015"
  },
  "schema_id": "dorsal/arxiv",
  "source": {
    "execution_id": "3597e33e-174b-4b9c-9804-9c72bef0a91d",
    "id": "arXiv Dataset IDs",
    "type": "Model",
    "variant": "snapshot-2026-03-01",
    "version": "0.1.0"
  },
  "user_id": 1000002
}