dorsal/arxiv
View SchemaLocalization and extinction of bacterial populations under inhomogeneous growth conditions
| Authors | Anna L. Lin, Bernward A. Mann, Gelsy Torres-Oviedo, Bryan Lincoln, Josef Kas, Harry L. Swinney |
|---|---|
| Categories | |
| ArXiv ID | q-bio/0310032 |
| URL | https://arxiv.org/abs/q-bio/0310032 |
| DOI | 10.1529/biophysj.103.034041 |
Abstract
The transition from localized to systemic spreading of bacteria, viruses and other agents is a fundamental problem that spans medicine, ecology, biology and agriculture science. We have conducted experiments and simulations in a simple one-dimensional system to determine the spreading of bacterial populations that occurs for an inhomogeneous environment under the influence of external convection. Our system consists of a long channel with growth inhibited by uniform UV illumination except in a small ``oasis'', which is shielded from the UV light. To mimic blood flow or other flow past a localized infection, the oasis is moved with a constant velocity through the UV-illuminated ``desert''. The experiments are modeled with a convective reaction-diffusion equation. In both the experiment and model, localized or extinct populations are found to develop, depending on conditions, from an initially localized population. The model also yields states where the population grows everywhere. Further, the model reveals that the transitions between localized, extended, and extinct states are continuous and non-hysteretic. However, it does not capture the oscillations of the localized population that are observed in the experiment.
{
"annotation_id": "51216b3d-620a-4908-b6a9-14ae03cfda05",
"date_created": "2026-03-02T18:01:28.773000Z",
"date_modified": "2026-03-02T18:01:28.773000Z",
"file_hash": "97f655537d75fe3740b665c358106bbea7acc396e172a662a1b74306c9885adb",
"private": false,
"record": {
"abstract": "The transition from localized to systemic spreading of bacteria, viruses and\nother agents is a fundamental problem that spans medicine, ecology, biology and\nagriculture science. We have conducted experiments and simulations in a simple\none-dimensional system to determine the spreading of bacterial populations that\noccurs for an inhomogeneous environment under the influence of external\nconvection. Our system consists of a long channel with growth inhibited by\nuniform UV illumination except in a small ``oasis\u0027\u0027, which is shielded from the\nUV light. To mimic blood flow or other flow past a localized infection, the\noasis is moved with a constant velocity through the UV-illuminated ``desert\u0027\u0027.\nThe experiments are modeled with a convective reaction-diffusion equation. In\nboth the experiment and model, localized or extinct populations are found to\ndevelop, depending on conditions, from an initially localized population. The\nmodel also yields states where the population grows everywhere. Further, the\nmodel reveals that the transitions between localized, extended, and extinct\nstates are continuous and non-hysteretic. However, it does not capture the\noscillations of the localized population that are observed in the experiment.",
"arxiv_id": "q-bio/0310032",
"authors": [
"Anna L. Lin",
"Bernward A. Mann",
"Gelsy Torres-Oviedo",
"Bryan Lincoln",
"Josef Kas",
"Harry L. Swinney"
],
"categories": [
"q-bio.PE",
"physics.bio-ph"
],
"doi": "10.1529/biophysj.103.034041",
"title": "Localization and extinction of bacterial populations under inhomogeneous growth conditions",
"url": "https://arxiv.org/abs/q-bio/0310032"
},
"schema_id": "dorsal/arxiv",
"source": {
"execution_id": "d7ee35d7-fcf4-481f-8824-3ab01fe8e1c5",
"id": "arXiv Dataset IDs",
"type": "Model",
"variant": "snapshot-2026-03-01",
"version": "0.1.0"
},
"user_id": 1000002
}