dorsal/arxiv
View SchemaCorrelation property of length sequences based on global structure of complete genome
| Authors | Zu-Guo Yu, V. V. Anh, Bin Wang |
|---|---|
| Categories | |
| ArXiv ID | physics/0006079 |
| URL | https://arxiv.org/abs/physics/0006079 |
| DOI | 10.1103/PhysRevE.63.011903 |
| Journal | Physical Review E, vol 63, (2001) 11903 |
Abstract
This paper considers three kinds of length sequences of the complete genome. Detrended fluctuation analysis, spectral analysis, and the mean distance spanned within time $L$ are used to discuss the correlation property of these sequences. The values of the exponents from these methods of these three kinds of length sequences of bacteria indicate that the long-range correlations exist in most of these sequences. The correlation have a rich variety of behaviours including the presence of anti-correlations. Further more, using the exponent $\gamma$, it is found that these correlations are all linear ($\gamma=1.0\pm 0.03$). It is also found that these sequences exhibit $1/f$ noise in some interval of frequency ($f>1$). The length of this interval of frequency depends on the length of the sequence. The shape of the periodogram in $f>1$ exhibits some periodicity. The period seems to depend on the length and the complexity of the length sequence.
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"abstract": "This paper considers three kinds of length sequences of the complete genome.\nDetrended fluctuation analysis, spectral analysis, and the mean distance\nspanned within time $L$ are used to discuss the correlation property of these\nsequences. The values of the exponents from these methods of these three kinds\nof length sequences of bacteria indicate that the long-range correlations exist\nin most of these sequences. The correlation have a rich variety of behaviours\nincluding the presence of anti-correlations. Further more, using the exponent\n$\\gamma$, it is found that these correlations are all linear ($\\gamma=1.0\\pm\n0.03$). It is also found that these sequences exhibit $1/f$ noise in some\ninterval of frequency ($f\u003e1$). The length of this interval of frequency depends\non the length of the sequence. The shape of the periodogram in $f\u003e1$ exhibits\nsome periodicity. The period seems to depend on the length and the complexity\nof the length sequence.",
"arxiv_id": "physics/0006079",
"authors": [
"Zu-Guo Yu",
"V. V. Anh",
"Bin Wang"
],
"categories": [
"physics.bio-ph",
"q-bio"
],
"doi": "10.1103/PhysRevE.63.011903",
"journal_ref": "Physical Review E, vol 63, (2001) 11903",
"title": "Correlation property of length sequences based on global structure of complete genome",
"url": "https://arxiv.org/abs/physics/0006079"
},
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